Index

A

atomic_volume_overlap() (hotspots.result.Results method)

C

cavity_centroid() (hotspots.hs_utilities.Helper static method) cavity_from_protein() (hotspots.hs_utilities.Helper static method)

compress() (hotspots.hs_io.HotspotWriter method) Coordinates (class in hotspots.hs_utilities) create() (hotspots.hs_docking.DockerSettings.HotspotHBondConstraint static method)

D

DockerSettings (class in hotspots.hs_docking)

DockerSettings.HotspotHBondConstraint (class in hotspots.hs_docking)

E

extract_volume() (hotspots.result.Extractor method)

Extractor (class in hotspots.result) Extractor.Settings (class in hotspots.result)

F

Figures (class in hotspots.hs_utilities) from_grid_ensembles() (hotspots.result.Results static method) from_hotspot() (hotspots.hs_pharmacophore.PharmacophoreModel static method) from_ligands() (hotspots.hs_pharmacophore.PharmacophoreModel static method)

from_pdb() (hotspots.calculation.Runner method) (hotspots.hs_pharmacophore.PharmacophoreModel static method) from_protein() (hotspots.calculation.Runner method) from_superstar() (hotspots.calculation.Runner method)

G

generate_fitting_points() (hotspots.hs_docking.DockerSettings method) get_atom_type() (hotspots.hs_utilities.Helper static method) get_difference_map() (hotspots.result.Results method) get_distance() (hotspots.hs_utilities.Helper static method)

get_label() (hotspots.hs_utilities.Helper static method) get_lines_from_file() (hotspots.hs_utilities.Helper static method) get_out_dir() (hotspots.hs_utilities.Helper static method) get_pharmacophore_model() (hotspots.result.Results method) grid_labels() (hotspots.result.Results method)

H

Helper (class in hotspots.hs_utilities) histogram() (hotspots.hs_utilities.Figures static method) HotspotReader (class in hotspots.hs_io) hotspots.calculation module hotspots.hs_docking module hotspots.hs_io module

hotspots.hs_pharmacophore module hotspots.hs_utilities module hotspots.result module HotspotWriter (class in hotspots.hs_io) HotspotWriter.Settings (class in hotspots.hs_io)

M

map_values() (hotspots.result.Results method) module hotspots.calculation hotspots.hs_docking hotspots.hs_io hotspots.hs_pharmacophore hotspots.hs_utilities hotspots.result

P

percentage_matched_atoms() (hotspots.result.Results method)

PharmacophoreModel (class in hotspots.hs_pharmacophore) PharmacophoreModel.Settings (class in hotspots.hs_pharmacophore)

R

rank_features() (hotspots.hs_pharmacophore.PharmacophoreModel method) read() (hotspots.hs_io.HotspotReader method)

Results (class in hotspots.result) Runner (class in hotspots.calculation) Runner.Settings (class in hotspots.calculation)

S

score() (hotspots.result.Results method)

T

tanimoto_dist() (in module hotspots.hs_pharmacophore)

W

write() (hotspots.hs_io.HotspotWriter method) (hotspots.hs_pharmacophore.PharmacophoreModel method)

X

x() (hotspots.hs_utilities.Coordinates property)

Y

y() (hotspots.hs_utilities.Coordinates property)

Z

z() (hotspots.hs_utilities.Coordinates property)